Basic Search - using default BLAST parameter settings

Enter your email address (Optional):

Enter query sequences here in Fasta format

Or upload sequence fasta file (Max. 5M):

Program     Database(s)

And/or upload sequence fasta file (Max. 5M):

 

Advanced Search - setting your favorite parameters below

 

Description:

ViroBLAST was established to provide sequence comparison and contamination checking on viral research. ViroBLAST is readily useful for all research areas that require BLAST functions and is available as a downloadable archive for independent installation (current version: viroblast-2.11.0). ViroBLAST implements the NCBI C++ Toolkit BLAST command line applications referred as the BLAST+ applications.

With the common features of other Blast tools, the ViroBLAST provides features like:

  • Blast multiple query sequences at a time via copy-paste sequences or upload sequence fasta file.
  • Provide email option to receive the result via email.
  • Blast against user's own sequence data set besides the public databases on ViroBLAST.
  • Blast against multiple sequence databases simultaneously (Using "Command" key [Mac] or "Ctrl" key [Windows] to select multiple databases or deselect database).
  • Summarize results via tabular output and allows further analysis.
  • Download sequences in databases that match user's query sequences.

Citation:

Please cite the following paper if you use ViroBLAST:

Deng W, Nickle DC, Learn GH, Maust B, and Mullins JI. 2007. ViroBLAST: A stand-alone BLAST web server for flexible queries of multiple databases and user's datasets. Bioinformatics 23(17):2334-2336.

Contact:

For any questions, bugs and suggestions, please send email to mullspt@uw.edu and include a few sentences describing, briefly, the nature of your questions and include contact information.